HsaEX0004128 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113236987-113240583:+
Coord C1 exon
chr4:113236987-113237172
Coord A exon
chr4:113237599-113237622
Coord C2 exon
chr4:113240485-113240583
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCAAACAACACTGCTTCAGATG
3' ss Score
3.01
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GATGGCTTTACTCCTCTAGCTGTGGCACTCCAGCAAGGACACAACCAGGCGGTGGCCATCCTCTTGGAGAATGACACCAAAGGGAAAGTGAGGCTGCCAGCTCTGCATATTGCCGCTAGGAAAGACGACACCAAATCTGCCGCACTTCTGCTTCAGAATGACCACAATGCTGACGTACAATCCAAG
Seq A exon
ATGATGGTGAATAGGACAACTGAG
Seq C2 exon
AGTGGTTTTACCCCTTTGCACATAGCTGCACATTACGGAAATGTCAACGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'25-33,'25-32,26-33
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0),PF136371=Ank_4=PU(50.0=50.0)
A:
PF136371=Ank_4=FE(11.3=100)
C2:
PF136371=Ank_4=PD(33.9=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGCCGCACTTCTGCTT
R:
GTTGCCACGTTGACATTTCCG
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development