BtaEX0003410 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13521178-13524907:-
Coord C1 exon
chr6:13524722-13524907
Coord A exon
chr6:13524257-13524280
Coord C2 exon
chr6:13521178-13521276
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCCACACAACACTGCTTCAGATG
3' ss Score
3.63
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GATGGCTTTACGCCCCTGGCGGTGGCGCTCCAGCAGGGACACAACCAGGCAGTGGCCATCCTCCTGGAGAACGACACCAAAGGGAAGGTGCGGCTGCCAGCCCTGCATATTGCAGCCAGGAAAGATGACACCAAATCTGCCGCCCTCCTGCTTCAGAACGATCACAACGCTGACGTACAGTCCAAG
Seq A exon
ATGATGGTGAATAGGACCACCGAG
Seq C2 exon
AGTGGATTCACCCCTTTGCACATCGCTGCCCACTATGGAAACGTCAACGTGGCAACTCTCCTTCTAAACCGGGGAGCTGCTGTGGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.625 C2=0.009
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(47.0=50.0)
A:
NO
C2:
PF127962=Ank_2=PU(29.0=81.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCCAGGAAAGATGACAC
R:
GTTTCCATAGTGGGCAGCGAT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development