GgaEX0018066 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58398285-58401181:-
Coord C1 exon
chr4:58400996-58401181
Coord A exon
chr4:58400495-58400518
Coord C2 exon
chr4:58398285-58398383
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCCAAACCATGCTGCATCAGATG
3' ss Score
1.89
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GATGGTTTCACTCCTTTAGCTGTTGCTTTGCAACAAGGACACAATCAAGCAGTGGCTATCCTGCTGGAAAATGACACCAAGGGGAAAGTGAGATTACCAGCTTTGCACATTGCTGCCAGAAAAGATGACACCAAATCAGCAGCGCTCCTACTGCAGAACGACCACAATGCCGATGTGCAGTCCAAG
Seq A exon
ATGATGGTGAATAGGACGACTGAG
Seq C2 exon
AGTGGCTTTACACCTTTGCACATAGCTGCGCATTATGGAAATGTCAATGTGGCAACACTTCTGCTAAACCGAGGAGCTGCGGTTGATTTCACAGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_CASSETTE6
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0)
A:
PF127962=Ank_2=FE(7.2=100)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCGATGTGCAGTCCAAG
R:
TGAAATCAACCGCAGCTCCTC
Band lengths:
112-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]