MmuEX0004901 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:127048182-127052873:-
Coord C1 exon
chr3:127052688-127052873
Coord A exon
chr3:127052226-127052249
Coord C2 exon
chr3:127048182-127048280
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCCACAAAACAATGCTTCAGATG
3' ss Score
2.35
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GACGGCTTTACTCCTCTGGCTGTGGCACTCCAACAGGGACACAACCAGGCGGTGGCCATCCTCTTGGAGAATGACACCAAAGGAAAGGTGAGGCTACCAGCCCTGCACATTGCTGCTCGGAAAGATGACACCAAGTCCGCCGCCCTCCTGCTTCAGAATGATCACAACGCTGATGTACAATCCAAG
Seq A exon
ATGATGGTGAACAGGACAACAGAG
Seq C2 exon
AGTGGCTTCACTCCTTTGCACATAGCTGCACACTATGGGAATGTAAATGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACCGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'38-44,'38-43,39-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.625 C2=0.002
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.5=48.4),PF127962=Ank_2=PU(52.1=61.3)
A:
PF136371=Ank_4=FE(11.3=100)
C2:
PF136371=Ank_4=PD(33.9=63.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTCGGAAAGATGACAC
R:
TGTGCAGCTATGTGCAAAGGA
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types