RnoEX0009339 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231351387-231356123:-
Coord C1 exon
chr2:231355938-231356123
Coord A exon
chr2:231355486-231355509
Coord C2 exon
chr2:231351387-231351485
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCCACAAAACAATGCTTCAGATG
3' ss Score
2.35
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GACGGTTTTACTCCTCTAGCCGTGGCACTCCAGCAGGGACACAACCAGGCGGTGGCCATTCTCTTGGAGAATGACACCAAAGGAAAGGTGAGGCTGCCGGCTTTGCACATTGCGGCTCGAAAAGACGATACCAAGTCCGCCGCCCTCCTGCTTCAGAACGATCACAATGCTGATGTGCAATCCAAG
Seq A exon
ATGATGGTGAACAGAACAACCGAG
Seq C2 exon
AGTGGCTTCACCCCTTTGCACATAGCTGCACACTACGGGAATGTAAACGTGGCGACTCTTCTTCTAAACCGGGGAGCTGCTGTAGACTTCACCGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'24-21,'24-20,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF136371=Ank_4=PU(50.0=50.0)
A:
PF136371=Ank_4=FE(11.3=100)
C2:
PF136371=Ank_4=PD(33.9=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGCGGCTCGAAAAGAC
R:
CGTAGTGTGCAGCTATGTGCA
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]