HsaEX0004128 @ hg19
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:493]
Coordinates
chr4:114158143-114161739:+
Coord C1 exon
chr4:114158143-114158328
Coord A exon
chr4:114158755-114158778
Coord C2 exon
chr4:114161641-114161739
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCAAACAACACTGCTTCAGATG
3' ss Score
3.01
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GATGGCTTTACTCCTCTAGCTGTGGCACTCCAGCAAGGACACAACCAGGCGGTGGCCATCCTCTTGGAGAATGACACCAAAGGGAAAGTGAGGCTGCCAGCTCTGCATATTGCCGCTAGGAAAGACGACACCAAATCTGCCGCACTTCTGCTTCAGAATGACCACAATGCTGACGTACAATCCAAG
Seq A exon
ATGATGGTGAATAGGACAACTGAG
Seq C2 exon
AGTGGTTTTACCCCTTTGCACATAGCTGCACATTACGGAAATGTCAACGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0),PF136371=Ank_4=PU(50.0=50.0)
A:
PF136371=Ank_4=FE(11.3=100)
C2:
PF136371=Ank_4=PD(33.9=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGCCGCACTTCTGCTT
R:
GTTGCCACGTTGACATTTCCG
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)