GgaINT0076221 @ galGal3
Intron Retention
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58398285-58400518:-
Coord C1 exon
chr4:58400495-58400518
Coord A exon
chr4:58398384-58400494
Coord C2 exon
chr4:58398285-58398383
Length
2111 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
AAGACCGTTTCCTTTTGTAGAGT
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATGATGGTGAATAGGACGACTGAG
Seq A exon
GTACCGAGATCAAAAATTTTAATTATTCTTTCTATTATTTATAATTATTTTCTCTGCTCTGTGACAACATTTCTTTATTATTTATCACTAAAAGTGAAGTTATGACTCTTTTTTAATCCATAACACTTTGTCACTCAGCAAACCTGTTACTGTTCATTCTTTGTCTTAGAATTTCTTTTTATTTGTGACTGTTACCGTAGTTACCGTATTAAGTAAACTTTTTGGAACTCTCAATCAGTTCAAAAAAATCTGAAGCGGGTTATGGAGCTAGAATACTGAAGATGTTTTTCTAGCTCAATTGATTTAATTCTGAAAATGCACTTACTTGCCATAACTAAATTAAGGCTGAGCCAGGAACATCGTAGAATACATTTGCTGTAGCAAAAATAATTGAATCCTCCAAGGTAAAAGACTTGTTCAGAGCATCTGTTTATTCTTACCATTGTTCTTAATATGATCTTTTCAATAAAGTTTTCAGAAGTCCTTAAGAGATAACAGTACATTTTTTTTATACTGATTGTGGAAGTAATGACTCTCCGAGCAAGTCCGCTAAAAATGTTGTGTCAGATTGGCTAGAACTGCCATTTATCCCCTAGTAATTATTGTCACATTTAGGAAAAAACAGTATTTCCAAGAACCACAGTCATTGTTTGAATCCTGCCTTTTAAGTAATCATCTCTTTGTTAGATGAGGGAATGAATTTTGAGTGCATGCACACGTGAATATGCTCCACGTTTGGTGTGTGCACACATGAACACATTGCTATGACGCAGCCTGCAATGGGAATGGAAACGGTGATGGCTTCCCGCTGCCATCTGCCTATGGACATGTTCTTCTCTTACAGTAAATGTAAAGCAGTTTACAACTTTTTCACTGGCCATTGCATTACCTTTAAGTACCTTGCATTTGTCACAGAGCAAATACATGTGCCGAGAAATTGTATTAATACAACATAAATTCACTCTATAACTTAATACGGTATTGTGTTTGTGTGCCTATATCCTCAGTAGACATTTTCCTGGTAATTTACGCAGCAACAATTCTGTGAATTTAATGACTGATTATACTTAGACCAGGATCACCTGTGAGATGGCAAAAAAGTTAATGGAAATAGGTTAAAATAATAGGCTGGTTGCTCTATCAAGAATAAAATCGATTTCAGGGCACAACATCTGCCTTTATTCCACATTTTTATGCGCTTATTTATACAATTCTTTATACCATGAGCAGTTTAAAATAATAATCGGTACACGGAAAGAAAGAAAGGTAGTTGAATATACAGTACAGTCCAGAAATGAAAAGTCTTTCTCTTTCCCGTAACTGCCAGTAAGACTGTGTAAGATCTGATCAAATCAGTGTAAAGCTCTTCAGGGAAACCTTAAAAAACGAGGTCCTTTCTACTTGAATTACTTATGAGCCTAAAAGCTTGCTGGGTGTCCTACTTTCTTTTTTATTCTGCTGTCATGTAATTCAGTATCTTGTAGCTGAAGCATGTTTCACCTTCTAGTGCTCAAGAGGCAATAAGTAAATCATGTTTTTTTTCTGATGTATAGATTGCAAAGTTCCTTCAGATCCTTTGAGAATGTATAAAAAGTAAATCAGTATTGTTCTTATAATATGCAGTCTGCTTAGCAAAGTTTCTCATGTAGACTAAGCTCCCGGTACTGAATATCCTCTGCTTTTTTTTTAAAAAAGAAGGAATTGTGTTGTCAAAATTTGTAATTCTTGGGTGAGTACAACAAGAGTCCAAGAACTTGTGTTGACTTTTAGGCAAAATTGCTGAACAGATGCAGGCTAAAAGACCCATGTTGTTTCCGAATTGTAATACGGAAATTCCCTTTACTTTCTTTAAAGATGAATTATATATTAATGTTTTCTGTGATGAAAGCTACTGACCTCTTATTGGCCTGCAAAAAATGAAAGAAGGAAGCACTTTTGATAATCTCCCACATGAAAACTACATGCTCTGCCTGAAAGACTTTGCTATATCATAGGTGAACTCGATAAAATCAACACAATTATTTGCCAGCAACTTTTAAAATCAAGTTCTAGTTAAGTTGATTGTATTGTATAAATTGATTTCTATAAATAAAGACCGTTTCCTTTTGTAG
Seq C2 exon
AGTGGCTTTACACCTTTGCACATAGCTGCGCATTATGGAAATGTCAATGTGGCAACACTTCTGCTAAACCGAGGAGCTGCGGTTGATTTCACAGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(7.2=100)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]