HsaINT0008168 @ hg38
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60261859-60264020:-
Coord C1 exon
chr10:60263835-60264020
Coord A exon
chr10:60261958-60263834
Coord C2 exon
chr10:60261859-60261957
Length
1877 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGCTATGTTTTCTTTACAGAGT
3' ss Score
10.17
Exon sequences
Seq C1 exon
GATGGCTTCACACCATTGGCAGTGGCTTTGCAACAAGGTCACGACCAAGTCGTTTCGCTCCTGCTAGAGAATGACACCAAAGGAAAAGTGCGTCTCCCAGCTCTTCATATCGCGGCCCGAAAAGACGACACGAAAGCCGCCGCCCTGCTGCTGCAGAATGACAACAATGCAGATGTGGAATCAAAG
Seq A exon
GTGAGGCACGAGGGACACGGGCCTGTCATGCAACTCTCCGGTGTTAGACACACAACCTTTAAGAGCACCCGGTCTCCCTCTTCGCAAGCTTATGCCATGCCTTTAACTTCATTGAAGGGAGGAACAATGTGTGTCTGAGCTAGCCACTGAAGGCACAGCCTCCCTTCACATGAGAAGTTGGGGGGTGAGGGGAATGCGGCCCTATGCGTGCTAAAAGGGAGGCCACCTCAGAAGAAATCAATTTCTATGCAGTGATCATTTCTTTCCTTTGAATATAGTTTTGGAATATATTCAACAGTTCAGCTCAAACATCAGGGCGAAAAATTACAAAATACTGAAGACAGTGTACACAAACAAACCTCTGGTTGATACCCAAGATGACAGGCCAGGCACTGAGCGTAGATCAGCTGCGGAAAGCATGCCAGCAGCAAGAGAGCCGCAGCCAAAAATTCCCATCGTCTTGACATGTGGTACCTGAAAGTCTCTGTGACGGAAATGTGACATTTGGACTAGGCCGTTGCGTAGCCCATCATTCAGTCTAGCTTTCTTTCTGTGCCTATTGTGCTTTCATCAGAGCTTCCATCCTCATTACTTAGCTGTCATGAGCTTTCTGCAATCCATATCACCAATAGTGAACTAACCGTTCATTTTTTCCTCCTCTTTGCTTCCAAATGTGTTAACCTAGATGGTGGTGAATAGAACAACAGAGGTATATATATATATGCATATACGTGTAGTCTATATCTGCATCATCATTTTCCCATGACTTAGTGCTGCTGCCTCATGTCTCTCCCTTCTTCTTTGCATCGCCTTCTGTAGGCTAGATACCTGCTTTATCCCCAATCCCTCCTCTCCCCAAAGGAGCATGTGCCAGATAAGATAGCAGTAGTTTGATTACCAGGGCTTTCTGCAGCTGAACCTGGTGTTTGAAAGAGATGAGGAATCCTTGACTCTTAAGGGTATTGCAATAGAGCTGTGTGAGATGAAGAGTCTGGACACTTTAGATGTTTATCAGCTATATCTAAAGCTGCAGACAACCCTGTCATTCTACTCATCCAGGACTCGTTTTTTAGGGTTGTGCATGACACTTACCCTCTGTGGTGTCAGCAAAAGGAAAGGTATTTCAGAATGGTGTCAATATGACCCACCCTTCTACAAGACTCAGTGAGATAGCTAGCATGGCTAAGAAGCTTGCTAACAAATTAGAAATGCATCTAGTTCCTATAAGGTTTCAATCTTTGGGGACTAAGTGAATCGCTGCATGTTTTAGCATTTTTTAAGGAAGTAAAATGACCTTGGTATGAACAATCCAAAAACATGTGTTATTGAATAGGCATTGGCTAACAAAGAGATTAACTTGTGGATTCTTCATGGAATACAATTGCCCATTATATAAAACCAACTTTGTGGTAGTACGTCTTCCCCCCAAAACTGCTTTTGTCATGAAAATTGGCATTTACTGTTCAGTAATATGAATCTATATCAAATATATAAACTAATTGAATTTTGAGTTTCAATGCACAATTCTATCGTCAGTAATAAAACAGCGGCACTAATCAAGCTATCAGCTATAAAGATTTTTCTCATCTCTATCTTAATTTCTTGAAATGTTGGCTTTTATATAGTTCTGTTATTGGATTACTAAAATTGCTCAGTCTCCACCCTTGGTTCCTCCCTGGCTATTCTTCTGCCTGTAAGTTTGGGGTTTATTAGAAACCCTGTGAGCAATTGGCACTGATCGAAACCTAGTACAGAATGGAACATAGACCTCAGCATATTTTGCTTCCTCATTTTTATTTGGGCAGGGTTATGATATTTGCCTGTCAGGCAGGGGGCTGGCAGGAATCAATTGAATGTCTGCTATGTTTTCTTTACAG
Seq C2 exon
AGTGGCTTCACTCCGCTCCACATAGCTGCTCACTATGGAAATATCAATGTAGCCACGTTGCTGTTAAACCGAGCGGCTGCTGTGGATTTCACCGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150:ENST00000280772:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
NA
C2:
PF127962=Ank_2=FE(43.2=100),PF127962=Ank_2=PU(9.6=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTTCACACCATTGGCA
R:
GTGAAATCCACAGCAGCCGC
Band lengths:
278-2155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development