MmuINT0015163 @ mm10
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69822208-69824416:+
Coord C1 exon
chr10:69822208-69822393
Coord A exon
chr10:69822394-69824317
Coord C2 exon
chr10:69824318-69824416
Length
1924 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTGTCCCGTTTTCTTCACAGAGT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GACGGCTTCACGCCATTGGCCGTGGCTCTGCAACAAGGTCATGACCAAGTCGTGTCCCTCCTGCTCGAGAACGACACGAAGGGAAAAGTGCGCCTCCCAGCCCTCCACATCGCAGCCCGGAAAGACGACACCAAGGCAGCAGCTCTGCTCCTGCAGAATGACACAAACGCGGACGTGGAGTCAAAG
Seq A exon
GTAGGGCCAGATCGATCGTGTCAGCCTTTCGCATCCTTGGCTTAAATCACGCAGGCAACCTTTGGGAACACCGGGTCTCCCTCCAGGCAAGCTTGTGTCAAAAGAAATAGGAGATCACTGAAAGGGATGAGAACATGTTTGCCGTGCCAGCCCACACTGTCACCCCGTGCCTCAGCCTGAGAAGCCAGAGAATGCTGTCCATGCTGTGGTATCTTATGCATGCCAAAAGGGAGGCAACTTCCAAAGAAAAGAATTTCCACGCTTCCACGGTTTCTTCCCTTCCGGTTTCATGAAGGGATGTATTGAACAGTGCAGGTCAAACATGAGAGCCACGCTATAAAGTGCTAGTGACCCTGTGTGCAAACTTCCAAGGTGTTGACCACTATGGTGATAGGCAGCACAGCCAGGGCGCATGCGCTGTGGGAAGCTTGCCTGGGGGAAAGAGCCACAGCCGAAGACTCCCGTAGTCTTGCTTGGAAGTCCATAGGGGGAAAATGGGGCGACGGACTAAGTCTCTGTGTAGCCGTTCTTTGTGGAGTCTAGCTTTCTTCCTGCACCCGACCCCCTTCCATCTTAGCTTCCATCTTCATCCCGTAGCTGCCATGAGCTTCCTGCCGTCCACGTCACCGAGTGAACTAACCGTTCATTTTTTCCTCCTCTTTGCCTCCCAATGTGTTAACCTAGATGGTGGTGAATAGAGCAACTGAGGTATATTTATGTATCTGTCTCTGTTTTTTTTTTGTTTGTTTGTTTTGTTTTTTTTTTTTGTTGTTTTGTTTTGTTTTTATTTTTGTATAATCGGGATCTGCTTCATCGCTTTCCATCCTCTAGGTTTGCTGCCTCATCCTGCCCATCCCCGCCCCTCCTTTTTTGCCTTGCCTTCTGTAGGCTAGAATCCTGCTTCACCCATCCCCTGGCCCTGAAGGAGCATGTGCGAGAGCAGACAGCAGGTGAATGGCCAGGGCTTTCTGCAGCTGAACTCGGCATTGGGAAGGAAGATTTAGGAATCCTCGAAATACCTTATGAGTATTGTTGCAGAGACGAAGGCCTCTGACACTTGTGATGCTTATCGGCTGTACCTAAAGCTGCAGACACCCCTGTCGCTCCACTCCTCCGGGACTCAGTCTTTAGGGTTCTGCATGACACCTTACCCTCCGTGGTGTCAGCAACAGGAGAGTTTCTCAGAACGGTGCAAGCTGACCCACCTTCCATTGAGAGGCAGAGATGGCTAGCATGGCTAAGAAGCTTGCTAACAAACCAGACACCCATCACCTCTTTTAGGTTCCGATTTGGCAGGGGGGATGGGGGAAATGAATTGCTGCATGTTTGACTTTTTATTTATTTATTTTTAAGGACGTAAAATGACCATGGCAGAAAAGCATCCCTAAAACTGTGTGCCTGAGCAGGCAGGCGCTAACAAAACAGATGAGCATCTCTGTTGTCTGTAGAACATGATCTTCCTTGATATAAACATCATACCTTGACGGTTTAATACCTCTAAAGGCCAACGCCCAGATTGCTTTAGTTCTTAAGACTGGCATTTACTGTCAGCTCACCTGAATTGTCCTGTAAGCTAACTGAATTTATTTTCAAGTCTCCATGGCCAGTTCTTTTACCTGCCTAACACAGCAGTTGTAATGGAGCCACACAGCTGTGAACTATAAGGGTTTTTGAGATGTTGGCTTCCGCACAGTTCTGCTAGTGGATCCCTTGAATTCATCAGTCTCCATCCCTGGGTTTTCCCTGGCTCTCCCTCTGCCTGTGAGCGTGGGTTTCCTTAGAAACCCTACACACCATTGACCCTGGCCCAAGCCTAGCACAGACTGGAATGTGGACCCCTGGCATATTTTGCTCCCTTGTGTTTATTTGAGCACAGGAAGAGCTGGAAGGAACCAACCGACCATTTGTCCCGTTTTCTTCACAG
Seq C2 exon
AGTGGCTTCACCCCGCTCCACATAGCTGCCCACTATGGGAACATCAATGTGGCCACGTTGCTGTTAAACCGAGCGGCTGCTGTGGACTTCACCGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601:ENSMUST00000182884:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(53.5=61.3)
A:
NA
C2:
PF127962=Ank_2=PU(23.3=60.6)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGGCCGTGGCTCTG
R:
CCGTGCGGTGAAGTCCAC
Band lengths:
273-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types