RnoINT0017430 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20274773-20276110:+
Coord C1 exon
chr20:20274773-20274796
Coord A exon
chr20:20274797-20276011
Coord C2 exon
chr20:20276012-20276110
Length
1215 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAT
5' ss Score
7.3
3' ss Seq
TTGTTATGTTTTCTTCACAGAGT
3' ss Score
10.26
Exon sequences
Seq C1 exon
ATGGTGGTGAATAGAGCAACTGAG
Seq A exon
GTATATAATATATATATCTATATGTATCTGTCTCCGTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTTCGGTTTTTTTGTATAATCGGGATCCGCTTCGACGCTTTTCCATTTCCTAGGTTTGCTGCCTCATCCCCCACCCCCACCCCTCCTTCTTTGCATTGCCTTCTGTAGGCTAGAATCCTGCTTCACCCATCCCCTGGCCCCGAAGGAGCATGTGCGAGAGCAGTCAGCAGGTTAATTGCCAGGGCTTTCTGCAGCTGAACTCTGGCATTGGGAAGGAAGACTTAGGACTCCTCGAAAATACCCATGAGTATTGTGACAGAGACAAAGGGCTCTGATACTTCTGATGCTTACCGGCTGTACCTAAAGCTGCAGACACCCCTGTCGCTCCACTCCTCCCGGACTCGGTCTTTAGGGTTCTGCATGACACTTAACCCTCCGCGGTGTCAGCAACAGGAGAGTTTCTCAGAACAGTGCAACCTGACCCACCTTCCATGAGAGGCAGTGACGGCTAGCATGGCTACGAAGCTCGCTAACGAACTAGACACGCATCACCTCCTTTAGGTTCCGATTTGGCGGGGGATGGGGGAGACGAATTGCTGCATGTTTGACTTGGTTTTTTTTATTTAAGGAAACAAAATGACCATGGCAGAAAAGTAGCCATAAAATTGTGTCGCTGAGCAGGGAGGTGCTAACAGAAAAGATGAGCATCTTGGTTCTTTGTAGAACACGATCTTCCTTGGTGTAAAAAAAAAAAATCACCTTATGGGACTAATACCTCTGCCCAACCCCAAATTGCTTCAGTCCTTAAGACTGACATTTACTGTTGGTTCACGTGAATTGTATAAGCCAATTGAATTTATTTTCAAGAGTCTCCAAGGCCAGTTTTTCTTTTACCTGCCTAAAACGGTGGTCGGAGCCACATAGCTGTGAACTAGAAGGGTTTTTGAGATGTTGGCCTCTGCACAGTTCTGCTAGTGGATTCCTTAAATTCATGTCTCCATCCCTGGGATTGTCCCGGCTCTCCCTCTGCCTGCGAGTGTGGGCTTCCTTAGCAACCCTACAAACCGTTGACCCTGGCCAAGGCCTAGCACAGACCGGAATGTGGATCCCAGCATATTTTGCTCCCTCATTTTTATCTGAGCATAGGAAGAGCTAGAAGGGACCAACCAACCATTTGTTATGTTTTCTTCACAG
Seq C2 exon
AGTGGCTTCACCCCACTCCACATAGCTGCCCACTACGGGAATATCAATGTGGCCACGTTGCTGTTAAACCGAGCGGCTGCCGTGGACTTCACCGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(11.3=100)
A:
NA
C2:
PF136371=Ank_4=PD(33.9=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]