DreEX0005010 @ danRer10
Exon Skipping
Gene
ENSDARG00000012600 | HELZ2 (2 of 3)
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr2:42100304-42102984:-
Coord C1 exon
chr2:42102763-42102984
Coord A exon
chr2:42102331-42102487
Coord C2 exon
chr2:42100304-42100471
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTGTTCTGCCACAGGTT
3' ss Score
10.53
5' ss Seq
AAGGTCATA
5' ss Score
2.53
Exon sequences
Seq C1 exon
CATGAAGAGATCTGCAAATTCCCATCAGAGGCATACTATAACGATATGCTGAAAACTGTTGTGCGTGAACGGACAAGCGTGCTGAATGCTGAAACTGAGGGAAGAAGACAAAGCAAGCGCATTCTGTTTGGAGATATACGTGGAGAAGAAATCGGTTTAGTTGTTTCAACTGCACGAGGAAACGAGAACTCAAAAGCTAACTTTGATGAAGTTAAGAAAGCG
Seq A exon
GTTGAGATTTGTATTCAGCTGGTAACAGTGGGCCGTGTGAGACCAGAGGACATTGCCATTCTATCACCCTATAATGCACAGGTGGCTCAGATCAGAGAGAGACTGTCTGATTTCGAATTGAAGGGATTCACTGTCACCACCATTACAAAGAGCCAAG
Seq C2 exon
GTAGCGAATGGCAGTATGTGATACTGTCAATAGTTCGTTCCTGTCCCAGTGATGAGATTGAACCTATGCCTTCAAGGGAATGGCTCTCCAAACACATTGGTTTTGTGGGCGATGAAAACCAGATAAATGTGGGCATCACAAGAGCACAAGTCGGCCTGTGCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012600-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(35.1=100)
A:
PF130871=AAA_12=FE(25.0=100)
C2:
PF130871=AAA_12=FE(26.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGTTGTGCGTGAACGGA
R:
GAGAGCCATTCCCTTGAAGGC
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]