RnoEX0041518 @ rn6
Exon Skipping
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176731325-176732066:-
Coord C1 exon
chr3:176731931-176732066
Coord A exon
chr3:176731598-176731754
Coord C2 exon
chr3:176731325-176731492
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTCTTACCTACTTAGGTC
3' ss Score
10.19
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCTCCTAGGTCATGTCGGCAAGCAGAGCTGCCCCGTCATCTTCGGCTCTGTGCAGGGCTACGAGCAGAAGCTGCTGGTGTCCACCGAGGAAGGCAATGAGAACTCCCGGGCCAACCCGGAGGAGGTAACAGAGGTG
Seq A exon
GTCCGAATCATCAAGCAGTTGACCCTGGACCGGACAGTGGATCCCAAAGATGTCGCGGTCCTTACACCTTACAATGCACAGGCTGCAGCAATCAGCAGGGGCCTCATGCAAAGAGGGGTCACTGGAGTGACTGTGACCTCTATCACCAAGAGCCAGG
Seq C2 exon
GGAGTGAGTGGCGCTATGTGATAGTGAGCACGGTTCGAACATGCCCCAGAAGTGATATGGACCAGCGGCCAACCAAGAGCTGGCTCAAGAAGTTTCTGGGCTTTGTTGTGGACCCCCACCAAGTAAACGTGGCCATCACCCGGGCCCAGGAGGGGCTGTGCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGTCATGTCGGCAAGCAG
R:
GGTCCACAACAAAGCCCAGAA
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]