DreEX0005338 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6986353-6990395:-
Coord C1 exon
chr18:6990310-6990395
Coord A exon
chr18:6989582-6989678
Coord C2 exon
chr18:6986353-6986493
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACATTAGTGTTTTGTTTAAGGGG
3' ss Score
5.9
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CATGTGAGTATGAAGGAAGGATTTATGGAGATGGAGAAGAGTTCAGGCCTCCTGGTGGTGGTCCGTGTGTCCTGTGTACATGCAAG
Seq A exon
GGGGGGAATGTAAGGTGTCACCAGGAAAGATGCCCACCTACTAATTGTCCAGTTCCTACTCCTGCGCCTCCTAACCAATGCTGCCCAGCGTGCAGAG
Seq C2 exon
GTTGTGTGTGGAATAACAATCAGTATGAGGAAGGATCCACATGGGCTGACGGTGAACAGATGTGTTCTTGTGTGGCAGGACAGGTGACGTGCCGTCTGAACTGTCCGACTCCTGAGTCCTGTCTGGAGCCCATAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'19-18,'19-17,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.8=93.1)
A:
PF0009313=VWC=PD(50.8=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAGTTCAGGCCTCCT
R:
ACTCAGGAGTCGGACAGTTCA
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]