BtaEX0018903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93672165-93672818:-
Coord C1 exon
chr4:93672733-93672818
Coord A exon
chr4:93672577-93672658
Coord C2 exon
chr4:93672165-93672317
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCACCCAGCCTCCCTCCTAGGCT
3' ss Score
4.45
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGTGAGTACCAGGGACACAAGTATCAGAACCAGGAGACCTTCCAGCTCCAAGAGAGTGGCCGCTGTGCCCACTGCTCCTGCCAG
Seq A exon
GCTGGTGAAGTCTCCTGCGAGGAGCGTGAGTGCCCAGGCATGCCCTGCACCCTGCCTGACTCTGGCCCCGAGCCCTGCTCAG
Seq C2 exon
TCTGCGTGCTTGATGAAGAGGAGTTTGCTGAGGGTGTCCAGTGGGAGCCTGATGGCCAGCCCTGCACGACCTGCTCCTGTCAAGCTGGGGTACCTGTGTGTGGGACTTTGCTCTGCTCCCCAGCCCCCTGCCAGCACCCCACCCAGCCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'19-21,'19-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=62.8)
A:
NO
C2:
PF0009313=VWC=PU(87.7=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTTCCAGCTCCAAGA
R:
CAGAGCAAAGTCCCACACACA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development