DreEX6064088 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6990310-6993317:-
Coord C1 exon
chr18:6993227-6993317
Coord A exon
chr18:6992708-6992807
Coord C2 exon
chr18:6990310-6990395
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATGTGCATTTTGCGATGCAGGGT
3' ss Score
6.93
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATGTACGGAATGTGTTTATGAGGGTGAAGTCTACGAGGATGGTCAAACCTTCATATCCAGACAGGATCCATGCTTGAGGTGTCAATGCTTG
Seq A exon
GGTGGACAAGTGTCATGTGATCCCCCAGGATCCTCATGTCCGCCTCCGACTTGCACTCATCCAACAAAACCACCAACTCAGTGCTGCGCGACTTGTAACA
Seq C2 exon
CATGTGAGTATGAAGGAAGGATTTATGGAGATGGAGAAGAGTTCAGGCCTCCTGGTGGTGGTCCGTGTGTCCTGTGTACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(1.8=3.2),PF0009313=VWC=PU(44.1=83.9)
A:
PF0009313=VWC=PD(52.5=91.2)
C2:
PF0009313=VWC=PU(45.8=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAATGTGTTTATGAGGGTGA
R:
TGCATGTACACAGGACACACG
Band lengths:
171-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]