RnoEX0046267 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56776360-56776958:-
Coord C1 exon
chr4:56776873-56776958
Coord A exon
chr4:56776721-56776802
Coord C2 exon
chr4:56776360-56776512
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCACTTAGCCTTCTTCCTAGGCT
3' ss Score
4.28
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGTAAATACCAGGGACATGAATATCGGAGCCAGGAGACCTTTACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCACCTGCCAG
Seq A exon
GCTGGTGAAGTATCCTGTGAGGAACAGGACTGCCCGGTCACCCCCTGTGTCCACACTGCCTCCGGCCCCCAGCTCTGCTCAG
Seq C2 exon
CCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTACCTGTTCCTGCCAAGACGGAGTGCCTGTGTGCAGGGCTGCACTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(49.1=93.1)
A:
PF0009313=VWC=PD(47.3=92.9)
C2:
PF0009313=VWC=PU(87.7=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGACCTTTACCCTCCA
R:
GGGTACTGGAGAGCAAAGTGC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]