DreEX0005675 @ danRer10
Exon Skipping
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49028720-49030033:-
Coord C1 exon
chr18:49029914-49030033
Coord A exon
chr18:49028916-49029035
Coord C2 exon
chr18:49028720-49028839
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAGTGTGTGTGTGTGTTTAGATG
3' ss Score
6.88
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGAAAATGAGCTTCAGTGTCCAGGAATGGAGTGTGTGAACTCGGTCGGGTCTTTCAAGTGTGTGTCCTGTAAGCCGGGATTTCAGCTTCTTGATGGCCAGTGCCAAG
Seq A exon
ATGTAGACGAATGCAGTCGTACGCCGAGGCGCTGCACTAACGGTCAGTGTAAAAACACTCCGGGCAGCTTCAGATGTGTGTGTGACGTGGGTTTCCACCTCCAGGATGGCGTCTGCACAG
Seq C2 exon
ACATGGACGAGTGTGTGGACCCGCTGCAGTGTCCCGGTCAGCAGTGCATTAATTCTCCAGGATCATATAAGTGTGTTCCCTGCAGAGACGGACACAGCATGCAGAGCGGACGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
78%=78=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENSDART00000160702fB503
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAACGAGTGTGAAAATGAGC
R:
CTCTGCATGCTGTGTCCGTC
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]