MmuEX6009241 @ mm9
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:28109106-28110280:-
Coord C1 exon
chr7:28110038-28110280
Coord A exon
chr7:28109313-28109438
Coord C2 exon
chr7:28109106-28109225
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGGCCTCTTCTATCCAGATG
3' ss Score
6.96
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATGTGGATGAATGCACCCAGAGCCCAGGCCTCTGTGGTCGCGGGGTCTGCGAAAACCTGCCCGGCTCTTTCCGCTGTGTTTGCCCGGCTGGCTTCCGGGGCTCGGCGTGTGAAGAAGATGTGGATGAATGTGCCCAGCAGCCTCCGCCTTGCGGGCCAGGCCGCTGCGACAACACCGCGGGTTCGTTCCACTGTGCCTGCCCAGCTGGCTTCCGATCCCGAGGACCAGGAGCCCCCTGCCAAG
Seq A exon
ATGTGGATGAATGTTCCCGGAGCCCCTCGCCTTGTGCCTATGGCCGCTGTGAGAACACGGAAGGCAGCTTCAAGTGTGTCTGCCCAACAGGCTTCCAACCCAACGCTGCGGGCTCCGAGTGCGAGG
Seq C2 exon
ATGTGGATGAGTGTGAGAACCGCTTGGCGTGTCCAGGGCAGGAGTGTGTGAACTCACCGGGCTCCTTCCAGTGCCGGGCCTGCCCTGTTGGGCACCACCTGCACCGTGGCAGATGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'27-24,'27-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=47.6),PF0764510=EGF_CA=WD(100=50.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACCTGCCCGGCTCTTTC
R:
GTGAGTTCACACACTCCTGCC
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: