RnoEX0051401 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84136498-84137573:-
Coord C1 exon
chr1:84137331-84137573
Coord A exon
chr1:84136713-84136830
Coord C2 exon
chr1:84136498-84136617
Length
118 bp
Sequences
Splice sites
3' ss Seq
GATTGGCCCCTTCTGCCCAGATG
3' ss Score
5.42
5' ss Seq
CGAGTGCGA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
ATGTTGATGAATGCACCCAGAGCCCAGGCCTCTGTGGCCGCGGGGCCTGCGAAAACCTGCCCGGCTCTTTCCGCTGTGTTTGCCCGGCTGGTTTCCTCGGCTCAGCGTGTGAAGAAGATGTGGACGAATGTGCCCAGCAGCCTCCGCCCTGCGGGCCAGGCCGCTGCGACAACACCTTGGGTTCATTCCACTGTGCCTGTCCAGCTGGCTTCCGCTCCCGAGGGCCAGGGGCCCCCTGCCAAG
Seq A exon
ATGTGGACGAATGTGCCCGGAGCCCCTCACCTTGTGCCTATGGCCGCTGTGAAAACACGGAAGGGAGCTTCAAGTGTGTCTGCCCTACAGGCTTCCAACCCAACGCTGCGGGCTCCGA
Seq C2 exon
ATGTGGATGAGTGTGAGAACCACTTGGCCTGTCCTGGGCAGGAGTGTGTGAACTCACCAGGCTCCTTCCAGTGCCGGGCCTGCCCTGTTGGCTACCACCTTCACCGTGGCAGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'24-21,'24-20,25-21
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=47.6),PF0764510=EGF_CA=WD(100=50.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGCGTGTGAAGAAGAT
R:
GTGAAGGTGGTAGCCAACAGG
Band lengths:
249-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]