DreEX0005893 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41127032-41128412:-
Coord C1 exon
chr11:41128284-41128412
Coord A exon
chr11:41127427-41127555
Coord C2 exon
chr11:41127032-41127160
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGTGTTTGTGTCATCTTCAGCGT
3' ss Score
9.7
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
CCTGTCCGCAGGGTTTCTATGGTCTGGACTGTCAGCAGAAGTGTGTGTGTTTGAACGGCGGTCTCTGTGATCATGTGAGCGGTCAGTGTTTCTGTAAGGCCGGATGGATCGGGACGCGCTGTAACCAGA
Seq A exon
CGTGTCCTGCGGGATGGTTTGGCGTGAGCTGTTCTCAGACCTGTGTTTGTCACAATAACAGCAGCTGTGATGCAGTGAGCGGTCAGTGTGAATGCGGTGCAGGCTGGACAGGAGACACATGCTCACAGC
Seq C2 exon
GCTGTCCTGCAGGTGTGTTCGGGGACGGTTGTGTTCACAGGTGTTTGTGTCAGAACGGGGCCTCGTGTGACCCTGAGAGTGGACACTGCTTCTGTCCTAGCGGCTGGACGGGGGCCGCCTGTCAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808_MULTIEX1-3/7=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
PF0005319=Laminin_EGF=PU(65.9=65.9)
C2:
PF0005319=Laminin_EGF=PD(31.8=31.8),PF079748=EGF_2=WD(100=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGGTTTCTATGGTCTGG
R:
CCGTCCAGCCGCTAGGAC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]