MmuEX6098377 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153639396-153640371:+
Coord C1 exon
chr4:153639396-153639524
Coord A exon
chr4:153639769-153639897
Coord C2 exon
chr4:153640243-153640371
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGGCTCCTCTCCTATTGCAGCTT
3' ss Score
9.68
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CCTGTCCTGCTGGCTTCTTTGGGTTAGACTGTGGCAGTGCCTGCAACTGCTCCGCCGGGGCCCCCTGTGATGCTGTCACTGGCTCGTGCATCTGCCCAGCTGGCCGCTGGGGCCCACACTGTGCCCAGA
Seq A exon
CTTGCCCACCTCTCACCTTTGGGCTTAACTGCAGCCAGATTTGTACCTGTTTCAATGGGGCCTCTTGCGACCCTGTCCTTGGGCAGTGCCACTGTGCTCCTGGCTGGATGGGACCCACCTGCCTGCAGG
Seq C2 exon
CCTGCCCTGCTGGCCTGTATGGCAAGAACTGTCAGCATTCCTGTCTCTGCCGAAATGGAGGGAACTGTGACCCCATCTTGGGCCAGTGCACGTGCCCAGAGGGTTGGACCGGCTTGGCCTGTGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTGCTGGCTTCTTTGG
R:
AAGCCGGTCCAACCCTCTG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: