GgaEX0001112 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:993579-995573:+
Coord C1 exon
chr21:993579-993707
Coord A exon
chr21:994538-994666
Coord C2 exon
chr21:995445-995573
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCTGTGTCTCTCCTGCAGCGT
3' ss Score
9.94
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCTGCCCAGATGGATTTTATGGCATTGAGTGTCAGCATGCCTGCAACTGCCAGAATGGAGCCCACTGTGACCACATCACTGGGCAGTGCCACTGCCACCCAGGCTGGACTGGGCCCCGCTGCGCCCATG
Seq A exon
CGTGCCCGCAGGGCAGGTTTGGTGAGGGCTGCAGCCAGGTGTGCAGCTGCTCCAACAATGCCACGTGTGACCACATCACTGGCCGCTGTCTGTGCACTGCTGGCTGGATGGGACCCACATGCCAGCAAG
Seq C2 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
PF079748=EGF_2=WD(100=70.5)
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGATGGATTTTATGGCA
R:
CAGCCCAGTCCATCCCATTG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]