GgaEX0001112 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1022045-1024039:+
Coord C1 exon
chr21:1022045-1022173
Coord A exon
chr21:1023004-1023132
Coord C2 exon
chr21:1023911-1024039
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCTGTGTCTCTCCTGCAGCGT
3' ss Score
9.94
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCTGCCCAGATGGATTTTATGGCATTGAGTGTCAGCATGCCTGCAACTGCCAGAATGGAGCCCACTGTGACCACATCACTGGGCAGTGCCACTGCCACCCAGGCTGGACTGGGCCCCGCTGCGCCCATG
Seq A exon
CGTGCCCGCAGGGCAGGTTTGGTGAGGGCTGCAGCCAGGTGTGCAGCTGCTCCAACAATGCCACGTGTGACCACATCACTGGCCGCTGTCTGTGCACTGCTGGCTGGATGGGACCCACATGCCAGCAAG
Seq C2 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'27-32,'27-31,28-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
PF079748=EGF_2=WD(100=70.5)
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGATGGATTTTATGGCA
R:
CAGCCCAGTCCATCCCATTG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]