DreEX6080174 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21212482-21215617:-
Coord C1 exon
chr23:21215489-21215617
Coord A exon
chr23:21215051-21215179
Coord C2 exon
chr23:21212482-21212610
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTATATGCGTCTCATCATAGCGT
3' ss Score
6.7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTTGTCCTGAGGGCTTTCATGGCTTGGAGTGCCAGCAGAAGTGCCAGTGCTTGAATGGTGGCCGTTGTCATCCCGTGACTGGAGGCTGCCAGTGTCCATCTGGTTGGGTCGGGCCAGTTTGCAATGCCA
Seq A exon
CGTGTGAAGCTGGCACCTTTGGGCCGGCCTGCAGTCAAACCTGTAGATGCCACAATAATGGCACCTGTGACCCTGCTGATGGGCGATGTGAGTGTGGAGCAGGATGGACAGGCAGCAGCTGTGAACAAG
Seq C2 exon
AGTGCTCAGCTGGATTGTATGGTGTGGGCTGCAACCAGCATTGCCTGTGTCAGAATGGAGGGTCGTGTGACCGAATCAGTGGCCACTGCACATGTGTCAGTGGGTGGACAGGAGTGGCCTGTGAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'25-21,'25-20,26-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCTGAGGGCTTTCATGG
R:
CTCCTGTCCACCCACTGACA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]