DreEX0005891 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41127427-41130950:-
Coord C1 exon
chr11:41130819-41130950
Coord A exon
chr11:41128499-41128627
Coord C2 exon
chr11:41127427-41127555
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTTACGGAATCTGTCCCAGAAT
3' ss Score
4.54
5' ss Seq
AACGTATGA
5' ss Score
4.39
Exon sequences
Seq C1 exon
TGTGTGACGCGGGCCGCTGGGGTCTGGACTGTGAGAGTGTATGTGACTGTCGTAATGCTGACGGTGTGTGTGATGCTCAGACTGGACGCTGTCATTGTGAGGCCGGATTTACTGGAGCACGATGTGACCAGA
Seq A exon
AATGCCCGGCTGGCTCGTTTGGGCCCGGCTGTAAGCATCGCTGCCAGTGTGAAAATCAGGCATCATGTGACCACGTGGGCGGAGCTTGTACCTGTAAGACCGGCTGGACCGGAACCTTCTGTGAAAAAC
Seq C2 exon
CGTGTCCTGCGGGATGGTTTGGCGTGAGCTGTTCTCAGACCTGTGTTTGTCACAATAACAGCAGCTGTGATGCAGTGAGCGGTCAGTGTGAATGCGGTGCAGGCTGGACAGGAGACACATGCTCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808_MULTIEX1-1/7=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.9)
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PU(65.9=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGGACTGTGAGAGTGT
R:
GCTGTGAGCATGTGTCTCCTG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]