MmuEX6098379 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154263646-154265415:+
Coord C1 exon
chr4:154263646-154263777
Coord A exon
chr4:154265070-154265198
Coord C2 exon
chr4:154265287-154265415
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACTGGCCTTTGTGTCTCAGGGT
3' ss Score
7.94
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
CCTGTGACAGTGGACACTGGGGGCCTGACTGCATCCACCCCTGCAACTGCAGTGCAGGCCATGGGAACTGTGACGCCGTCAGTGGCCTCTGCCTGTGTGAGGCTGGCTACGAAGGTCCGCAGTGTGAGCAGT
Seq A exon
GGTGTCGCCAAGGCTACTTTGGGCCCGGCTGCGAGCAGAAGTGCAGGTGTGAGCATGGGGCCACCTGTGACCATGTCAGTGGGGCCTGTACCTGCCCAGCTGGCTGGAGGGGAAGCTTCTGCGAGCACG
Seq C2 exon
CCTGTCCTGCTGGCTTCTTTGGGTTAGACTGTGGCAGTGCCTGCAACTGCTCCGCCGGGGCCCCCTGTGATGCTGTCACTGGCTCGTGCATCTGCCCAGCTGGCCGCTGGGGCCCACACTGTGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'35-30,'35-29,37-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.6=26.7),PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
PF0005319=Laminin_EGF=PD(34.0=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACACTGGGGGCCTG
R:
CCAGCTGGGCAGATGCAC
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types