BtaEX6069269 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50796132-50797144:+
Coord C1 exon
chr16:50796132-50796263
Coord A exon
chr16:50796789-50796917
Coord C2 exon
chr16:50797016-50797144
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGAGAGTCCGGTGTCTCAGGGT
3' ss Score
1.35
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCTGTGACAGCGGCCACTGGGGCCCCGACTGCAGCTTCACCTGCAACTGCAGTGCAGGCCACGGGGGCTGTGACGCCGTCAGCGGCCTGTGTGTGTGTGAAGCCGGCTACGTGGGCCCGCGGTGTGAGCAGC
Seq A exon
GGTGTCCCCAGGGCTACTTCGGGCCGGGCTGTGGGCGGCAGTGCCAGTGCGAGCACGGGGCGGCCTGTGACCATGTCAGCGGGGCCTGCACCTGCCCTGCCGGCTGGAGGGGCACCTTCTGTGAGCGAG
Seq C2 exon
CCTGCCCAGCCGGCTTCTTTGGAGTGGACTGTGGCCATGCCTGTGACTGCAGTGCCGGAGTCCCCTGTGATCCTGTGAGCGGCTCCTGCCTCTGTCCTTCCGGCCGCCAGGGCCCCCGCTGTGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'24-28,'24-26,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.7=28.9),PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
PF0005319=Laminin_EGF=PD(34.0=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACAGCGGCCACT
R:
CGGAAGGACAGAGGCAGGAG
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]