GgaEX6023690 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1021410-1022173:+
Coord C1 exon
chr21:1021410-1021541
Coord A exon
chr21:1021801-1021929
Coord C2 exon
chr21:1022045-1022173
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTGCTCTCTCCCCAGGTT
3' ss Score
11.28
5' ss Seq
ACCGTATGT
5' ss Score
6.73
Exon sequences
Seq C1 exon
GCTGTGCTGTGGGGCGTTGGGGTCCGGGCTGTGCCAACGTCTGCGAGTGCAGCAGCAGCACCGGGAGCTGCGATGCGGTGACGGGGCAGTGCGCCTGCGATGCCGGCTACACGGGCAGCCGCTGCGAGGAGC
Seq A exon
GTTGCCCGGCAGGATGGTTCGGGTTGGGCTGCCGGCGCCGCTGCCAGTGTGAGCACGGGGCTATGTGTGACCACGTCAGTGGGGCATGCACATGTGCTGAGGGCTGGAGGGGGACCTTCTGTGAGCACC
Seq C2 exon
CCTGCCCAGATGGATTTTATGGCATTGAGTGTCAGCATGCCTGCAACTGCCAGAATGGAGCCCACTGTGACCACATCACTGGGCAGTGCCACTGCCACCCAGGCTGGACTGGGCCCCGCTGCGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'25-30,'25-28,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
PF0005319=Laminin_EGF=PD(34.0=36.4)
C2:
PF126612=hEGF=WD(100=29.5)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGTGGGGCGTTG
R:
ACTGCCCAGTGATGTGGTCA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]