DreEX0006079 @ danRer10
Exon Skipping
Gene
ENSDARG00000079124 | MTERF4
Description
mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
Coordinates
chr2:44692914-44701430:+
Coord C1 exon
chr2:44692914-44692990
Coord A exon
chr2:44697683-44698064
Coord C2 exon
chr2:44701246-44701430
Length
382 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCTGTGTTGTCAGATG
3' ss Score
9.55
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GAGCTCTGGCTGTTGTTGCGGGGTCGGTCGTGTTTTGACGCAGCACAGCTATGGGTTCACATGTATGCAGAAAACAG
Seq A exon
ATGGTGCGATGGCTGTGGAGATGGAGTGCATGTCCTGTGGTGATGAACAGAGGTCATATGCCGTTCTGCTCCACACAGCAAGAGCCCCGTCATCTGAATTCGTCCCACAGCAGTCAGATGCCCCACAGCCCTGTGAATCAGCTCACCTTATGTTCTTTACTCCAGATGGGCTTCTCACAGACTCAAGCCGAGGAGATGCATGAAGCAGCCCTGAAGAGCCGCGGCAAACATGTACCTTCAGTTCTCACAGCGCTCTTCGTCCTGGGCTTCAATCCCTCCAGCGTGCTGAAAATACTGCAGAAGTGTCCTGAGGTGTATTCGGCTAAAGGTGAAGAGCTGCAGCAGCGCATCCTTAATCTGAGGAAGATGGGATTGGTAGAAG
Seq C2 exon
GTAGTTTACAGAGGATGATCAGTCACTACCCCAAAGTCATGGTCCTGCCATTAAAAAGGGTAAACGCAGTATCGCGATTGCTCAAAGAAAAATGCCACTTCACCACCCAACAAGTCACAGAAATCCTCCGAAACTCTCCTGAGGTTTTGGAGGAGGATTTAGCCCAGCTGGAGTACAAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079124-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF025369=mTERF=PU(39.0=64.8)
C2:
PF025369=mTERF=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCTGTTGTTGCGGG
R:
ATCTTGTACTCCAGCTGGGCT
Band lengths:
255-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]