RnoEX0056245 @ rn6
Exon Skipping
Gene
ENSRNOG00000037376 | Mterf4
Description
mitochondrial transcription termination factor 4 [Source:RGD Symbol;Acc:1562440]
Coordinates
chr9:100442035-100445158:-
Coord C1 exon
chr9:100445137-100445158
Coord A exon
chr9:100443912-100444410
Coord C2 exon
chr9:100442035-100442219
Length
499 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGCTCTGCCTTACAGGTT
3' ss Score
11.22
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CATGGCTTCGCTGGGAAGGCAG
Seq A exon
GTTCCTGAATGGCATCGTCTAATGGCCCTTTCCTGGGCCTGTTTGGCTAGGCAGACCTGTCATTTCAGAAAAGAGAAAAAGATGAGTCCTTCTTTGTTTTGTAAACTGACTACAGTACCCAGTAGAGGGAACTTTCAAGAGTTTTCCAGCGTTAGACCCAAAAAGTACATGCAGGAACCAGAACACAGGACACGTCTTGTTCCGTGTCTTCATGAGGAACAGAGGACATGTATGGGTTCTGAGTCCTTGGAGCTTGAAAGGGCCATCAGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCATATTGACAGCTTGCTCAATATACAACCAAGTGTCCATCCTCAACAGTTGCTGGACATAATTTCAGAACTTCTACTCTTGGGGTTGAACCCAGAGCCTGTATTTATGGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTGCCACGCAAATGAAGAGGCGTTCCAGTTACCTTCGGAAGCTCGGCCTTGGAGAAG
Seq C2 exon
GGAAACTGAAGCGGGTGCTTTCTGTTTGCCCTAAGGTTTTCACCATGCGTCAGCAGGACATTGATAATATTGTAAAAGTCCTCAAGGAGAAGTGCTTGTTCACAGTACAGCACATCACTGACATTCTGCACAGATGCCCAGCTGTTTTGCAGGAGGACCCCAGTGAGCTAGAATACAAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037376_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF025369=mTERF=PU(45.8=65.9)
C2:
PF025369=mTERF=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]