Special

MmuEX6026485 @ mm9

Exon Skipping

Gene
ENSMUSG00000026273 | Mterfd2
Description
MTERF domain containing 2 [Source:MGI Symbol;Acc:MGI:1918355]
Coordinates
chr1:95199295-95202440:-
Coord C1 exon
chr1:95202402-95202440
Coord A exon
chr1:95201185-95201683
Coord C2 exon
chr1:95199295-95199479
Length
499 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGCTCTGCCTTACAGGTT
3' ss Score
11.22
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GTTCTTCGCTTGGTCTCCATGGCTTCGCTGGGAAGGCAG
Seq A exon
GTTCCTGAGTGGCATCGTCTACTGGCCCTCTCCTGGGCCTGTTTGGTTAGGCAGACCCCTCATCTCAGAGAACAGAAACAGATGAGCCCTTCTTTGTCTTGCAAACTGACTACAGTGCCCGGTAGAGGAAGCTTTCAAGAGTTTTCCAGCATTACACCCCAAAAGTACATGCAGGAACCAGAAAACAGGACACGACTTGTTCAGTGTCTTCATGAGGAACAGAAGCCTTGTGTGGATCCTGAGTCCTTGGAGCCTGAAAAGGTCATCCGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCACATTCACAGCTTGTTTAGTATACAGCCAAGTGTCCATCCTCAACAGTTGCTGGGTATAGTTTCAGAACTCCTACTCTTGGGGTTGAACCCAGAGCCTGTATTTAATGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTAGCATGCAGATGAAGAGGCGTTCCAGTTACCTTCGGAAGCTTGGCCTTGGAGAAG
Seq C2 exon
GGAAACTGAAGCGGGTGCTGTCCGTTTGCCCTGAGGTTTTCACCATGCATCAGCGGGACATTGACCGAGTTGTGAAGGTCCTCAGGGAGAAGTGCTTGTTCACGGCACAGCACATCACAGACGTTCTGCACAGATGCCCCACTGTTTTGCAGGAGGACCCCAACGAGCTAGAATACAAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026273-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.084 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF025369=mTERF=PU(44.7=62.9)

							
C2:
PF025369=mTERF=FE(26.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000027492





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108564, ENSMUSP00000108566
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:241099396-241099894 
ALTERNATIVE
HsaEX0040439
(MTERF4)
Human
(hg19)
chr2:242038811-242039309 
ALTERNATIVE
HsaEX0040439
(MTERFD2)
Rat
(rn6)
chr9:100443912-100444410 
HIGH PSI
RnoEX0056245
(Mterf4)
Cow
(bosTau6)
chr3:120813683-120814166 
HIGH PSI
BtaEX6019582
(MTERFD2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr2:44697683-44698064 
HIGH PSI
DreEX0006079
(MTERF4)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTCTTCGCTTGGTCTCCATGG

				
R: 
TGGAATTTGTATTCTAGCTCGTTGGG

				
Band lengths: 
222-721

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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