DreEX0006119 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3639676-3643183:-
Coord C1 exon
chr5:3643018-3643183
Coord A exon
chr5:3641238-3641311
Coord C2 exon
chr5:3639676-3639911
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTATTGTTTTACAGGCT
3' ss Score
10.34
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GTTTTCTGCAGAAAGCGGCGGATCTGCTGCAGGTTTCTTTAGATGAGCTGCAGTCGTGTCTGATAGTGAGAACTCTGCGTGCTGGCAAACAAAACATCCTCAAACCTTGCTCTCAGTCCGAGTGTGGCATCCGCAGAGACTGTCTTGCTAAAGTCATTTATGCACA
Seq A exon
GCTATTTGACTGGTTAGTCACTTTCATCAACAACAGCATGTCTGCAGACAGTTCCATGTGGTGCAACTTTATTG
Seq C2 exon
GTCTGCTGGATGTGTATGGTTTCGAATGCTTCCTCCTGAATAACCTGGAGCAGCTGTGTATTAATTACGCTAACGAGAAGCTACAGCAGCACTTCGTGGCTCATTATCTGAAGGCCCAGCAGGAGGAGTATGTGAGTGAGGGGCTGCAGTGGTCTTTCATTCGTTACCAAGACAACCAGGGCTGCCTGGACCTGATTGAAGGCAGTCCCTCCAGCATCATCTCTCTGCTCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.3=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCAGAGACTGTCTTGCTA
R:
GCCCCTCACTCACATACTCCT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]