MmuEX6088400 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84711051-84713819:+
Coord C1 exon
chr11:84711051-84711222
Coord A exon
chr11:84712879-84712952
Coord C2 exon
chr11:84713698-84713819
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTACTCTTCCTCATCAACAGGCT
3' ss Score
8.84
5' ss Seq
TAGGTAGCA
5' ss Score
2.58
Exon sequences
Seq C1 exon
TCTCTGTGAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAGAAAATGCTGCTGGAGAGTATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCCGAGCCGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
Seq A exon
GCTGTTCGACTGGCTGGTGTCTGTGATCAACAGCAGCATCTGTGCAGACTCCAAATCATGGACTGCCTTCATAG
Seq C2 exon
GGCTGCTAGATGTGTATGGGTTTGAGTCATTTCCTAATAACAGTTTGGAACAGCTGTGCATCAACTATGCCAATGAGAAGCTACAGCAGCACTTCGTGGCTCACTACCTCAGGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.8=100)
A:
PF0006316=Myosin_head=FE(3.8=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGAACCATCAAGGCAGGC
R:
TGCACAGCTGTTCCAAACTGT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: