HsaEX0041086 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36507803-36510917:-
Coord C1 exon
chr17:36510746-36510917
Coord A exon
chr17:36509062-36509135
Coord C2 exon
chr17:36507803-36507924
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCACTCTCTTCCCCCAACAGGTT
3' ss Score
11.95
5' ss Seq
TAGGTAGCA
5' ss Score
2.58
Exon sequences
Seq C1 exon
ACTCTGTCAGGACGGCAGCCTCGCTGCTGGGGCTCCCAGAGGACGTGCTGCTGGAGATGGTGCAGATTAGAACCATCAGGGCAGGCAGACAGCAGCAGGTGTTCCGGAAGCCCTGCGCCCGAGCCGAGTGTGACACCCGTAGAGACTGCCTGGCCAAACTGATCTATGCGCG
Seq A exon
GTTGTTTGACTGGCTGGTATCAGTGATCAACAGCAGCATCTGTGCAGACACCGACTCGTGGACCACTTTCATAG
Seq C2 exon
GCCTGCTGGATGTGTATGGATTTGAATCATTTCCTGACAACAGTCTGGAACAGTTGTGCATCAACTACGCCAATGAGAAGCTGCAGCAGCATTTTGTGGCTCACTACCTAAGGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'49-63,'49-62,51-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(54.7=97.2)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTGACACCCGTAGAGA
R:
CTGGGCCCTTAGGTAGTGAGC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development