DreEX0006791 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50917398-50918067:-
Coord C1 exon
chr18:50917951-50918067
Coord A exon
chr18:50917801-50917831
Coord C2 exon
chr18:50917398-50917587
Length
31 bp
Sequences
Splice sites
3' ss Seq
AATGCAGTGTTTTTCTCCAGACT
3' ss Score
5.46
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACAGGTGAAGGTGTGTGTGTGCTGCTGGACAGTGCTGTAGGTGTGTGTGCTCAGCTCTGTGTCTCTACAGTGGAGATGGAGGAAGCCGCCGGCCGGCTGAAGAGCTTCACTAAACTG
Seq A exon
ACTCTGGACCACAGCGGTGACCTTCACACAG
Seq C2 exon
CTGTAGTGGCGCTCCACCGCTCTCTCCTGAAGCTGCTTCAGATTTTCTTCAGGAGTTTTGATCTGGACTTCAGTGTTTGGGGAACACACACACACTCACACACACCGCCGTCAGACGTGCAGAATCACCGCGGCGTTCTGCAGCTCAGCCTGACAAGTTTACACACACTGCAGCCCGGCTGGAGGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGTGTGTGTGCTCAGCTC
R:
GAAGCAGCTTCAGGAGAGAGC
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]