RnoEX0065963 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173820437-173834461:+
Coord C1 exon
chr4:173820437-173820559
Coord A exon
chr4:173830234-173830267
Coord C2 exon
chr4:173834266-173834461
Length
34 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTCCCACTTTTTAGAAT
3' ss Score
8.66
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCACATGGGAATGACATTATTGAAGATGTTAGAAACATATGCAGTGTTCTGGGGTGTATTGAAACCAAACAAGTTTCAGATGCAGTAAAAGAACTAACTCTAATTCTGCAGAGACCATCACAG
Seq A exon
AATTTTCATCAGAATTCAGAGACTTCAAAAAAAG
Seq C2 exon
GCTTCATAGAGAACGTGACATCGGAACTGTCGAGGTCCCTCCATCAGCTGGTTGACGTGTACTGCAGTAGCTTTTGTACAGATTTCCGGCCTGCGCGCGCACCTGGAGGCGTCTCCCGCGACCACGCTGGGCTCCACTCCCACCTGAGCTTCACGGTGTGTTCCCTGCACAATGTTCCAGAAACTTGGGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGTTCTGGGGTGTATTG
R:
CTCGACAGTTCCGATGTCACG
Band lengths:
118-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]