GgaEX7000648 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64168611-64181746:+
Coord C1 exon
chr1:64168611-64168736
Coord A exon
chr1:64174302-64174329
Coord C2 exon
chr1:64181551-64181746
Length
28 bp
Sequences
Splice sites
3' ss Seq
CTTGGGTTTTATTTTTCTAGGAT
3' ss Score
9.65
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCATACAAAGTTGATTATGTGATTGAAGTAGCTAAAGCAATCTGCAGTGTCCTCTGCTTCGTGGAGACCAGACAAATTACCAGTGCAGTCAAGAAACTACATGCAGTGCCGTTGGTGAAAACACAG
Seq A exon
GATTCACTTCAACATGTGGAAGCACAAG
Seq C2 exon
CATTAACGGAAGCTGCTGTGACAGAGCTCTCCATGGCCATCTCTCATCTCATCCATGTGTACAGCAGCAGCTTTGATACAGATTTCCAGGTTGCCAACATACCTAGAAGCCCTTCTCGTGCAGACATCAGCCTTGATTCCCAGCTCAGCTTCACTGTCTATGCTGCTCATAACATTCCTGAAGCCTGGGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'8-11,'8-8,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.9=1.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGTGGAGACCAGACAAA
R:
GAGATGGCCATGGAGAGCTCT
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]