DreEX0007479 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30949397-30951856:-
Coord C1 exon
chr8:30951641-30951856
Coord A exon
chr8:30949750-30949853
Coord C2 exon
chr8:30949397-30949481
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTCTTGACACCAGAAA
3' ss Score
4.94
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGCTGTTTAAGAGGGTTGTTCCATATCATTGTTTAGGGGGCATATGGTCCCAGAGAGATAAAAAGGGCAAAGAGCACCTGGCACCAACCATCCGTGCTACTGTTTCTCAGTTCAACAGTGTGACCAACTGTGTGATCGCCACCTGCCTGGACAACAGGTCTCTCAGACCTTTCCAAAGAGCCAAGCGCATTGAACATTGGATAGAAGTTGCCAGG
Seq A exon
AAATGCCGTATCCTGAAGAGCTTCTCCTCTCTGAAAGCCATCCTGTCTGCCTTGCAGAGTAATGCCATCCACAGGCTGAGAAGGGCCTGGGATGATGTTTCACG
Seq C2 exon
GGAAAGCTATCGAACTTTCCAAGAGCTGTCTGAAATCTTCTCAGACGACAATAATTACTCACTCAGCAGAGAGCTTCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATATGGTCCCAGAGAGA
R:
GCTCTCTGCTGAGTGAGTAAT
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]