GgaEX1049097 @ galGal3
Exon Skipping
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8029293-8034280:+
Coord C1 exon
chr8:8029293-8029508
Coord A exon
chr8:8033368-8033471
Coord C2 exon
chr8:8034196-8034280
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTAACCACTCCTTTTGCAGGAA
3' ss Score
10.21
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AAGCTCTTCAAGAAAGTTGTGCCCCACCACTGTTTGGGATGCATCTGGTCTCGAAGGGATAAGAAAGAAAACAAGCACCTGGCACCTACCATCAGAGCCACCATCTCTCAGTTCAATGCGGTTACCAAATGCGTTGTCAGCACTATCCTGAAGAGCAAAGAACTCAAAACCCAGCAGAGGGCCAAGATCATTGAGAAGTGGATTCATATCGCACAC
Seq A exon
GAATGTAGGATCCTGAAGAATTTTTCCTCCTTGAGAGCCATCGTTTCAGCACTGCAGTCCAACTCCATCTATCGGCTAAAGAAGACCTGGGCAGCTGTTCCAAA
Seq C2 exon
GGACAGAATGCTGATGTTTGAAGAGCTGTCTGATATCTTCTCAGATCATGACAATTATTTGACAAGTAGGGAGCTGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.1=100)
A:
PF0061714=RasGEF=FE(15.4=100)
C2:
PF0061714=RasGEF=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCTGGTCTCGAAGGGAT
R:
AGCAGCTCCCTACTTGTCAAA
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]