RnoEX0075451 @ rn6
Exon Skipping
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69936554-69944404:-
Coord C1 exon
chr13:69944189-69944404
Coord A exon
chr13:69940629-69940732
Coord C2 exon
chr13:69936554-69936638
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTCATCCCTCCCCACACAGGAA
3' ss Score
9.45
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAACTGTTCAAGAAGGTCGTACCGCACCACTGCCTGGGCTGCGTTTGGTCTCGGCGGGATAGAAAGGAAAACAAGCATTTGGCCCCTACCATCCGGGCCACCATCTCTCAGTTCAACGCCCTCACCAAGTGTGTGGTCAGCACCATCCTGGGGAGCAAGGACCTCAAAACCCAGCAGCGAGCCAGAGTCATCGAGAAGTGGATCAACATTGCTCAC
Seq A exon
GAATGTAGAATCCTGAAGAATTTTTCCTCCTTGAGGGCCATCGTTTCCGCTCTACAGTCTAATTCCATCTATCGGTTGAAAAAGGCATGGGCTGCCGTCCCCAA
Seq C2 exon
GGACAGAATGCTGATGTTTGAAGAACTTTCAGAGATCTTCTCTGATCATAACAACCATCTCACCAGCCGGGAACTTCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347-'22-17,'22-16,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
PF0061714=RasGEF=FE(15.3=100)
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCTCGGCGGGATAGAAA
R:
TTCATGAGAAGTTCCCGGCTG
Band lengths:
256-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]