MmuEX6028214 @ mm10
Exon Skipping
Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:152544351-152552636:-
Coord C1 exon
chr1:152552421-152552636
Coord A exon
chr1:152549067-152549170
Coord C2 exon
chr1:152544351-152544435
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCACTCCCCACACAGGAA
3' ss Score
9
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAACTATTCAAGAAGGTAGTGCCTCACCATTGCCTGGGCTGTATTTGGTCTCAGCGGGATAAAAAGGAAAACAAGCATTTGGCTCCTACGATCCGTGCCACCATCTCTCAGTTTAATACGCTCACCAAGTGTGTTGTCAGCACCGTCCTGGGGAGCAAGGAACTCAAAACTCAGCAGCGAGCCAGAGTCATCGAGAAGTGGATCAACATTGCTCAC
Seq A exon
GAATGTAGAATCCTGAAGAATTTTTCCTCCTTGAGGGCCATCGTTTCCGCACTGCAGTCTAATTCCATCTATCGGTTGAAAAAGGCTTGGGCTGCTGTCCCGAA
Seq C2 exon
GGACAGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCTGATCACAATAACCATCTAACCAGTCGGGAGCTACTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482-'36-32,'36-30,38-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
PF0061714=RasGEF=FE(15.3=100)
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATTTGGTCTCAGCGGG
R:
AGCTCCCGACTGGTTAGATGG
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types