BtaEX6070321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66397255-66405004:+
Coord C1 exon
chr16:66397255-66397470
Coord A exon
chr16:66401158-66401261
Coord C2 exon
chr16:66404920-66405004
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTAATCACTCTCTGTACAGGAA
3' ss Score
9.42
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAACTGTTTAAGAAAGTCGTGCCTCACCACTGCCTGGGCTGCATCTGGTCTCGAAGGGATAAGAAGGAGAACAAACACTTGGCCCCTACGATCCGTGCCACCATCTCTCAGTTTAACACCCTCACCAAATGTGTGGTCAGCACCATCCTGGGGGGCAAAGAACTCAAGACTCAGCAGAGAGCCAAGATCATCGAGAAGTGGATTAACATTGCTCAC
Seq A exon
GAATGTAGAATCCTGAAGAATTTCTCCTCCTTGAGGGCCATCGTTTCGGCGCTGCAGTCCAATTCCATCTATCGTTTAAAAAAGACTTGGGCTGCGGTCCCAAA
Seq C2 exon
GGACCGAATGCTGATGTTTGAAGAGCTTTCAGATATCTTCTCAGACCATAATAACCATCTGACCAGCCGGGAGCTACTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
PF0061714=RasGEF=FE(15.3=100)
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCTGGTCTCGAAGGGAT
R:
CCGGCTGGTCAGATGGTTATT
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]