DreEX6049273 @ danRer10
Exon Skipping
Gene
ENSDARG00000005989 | rgl1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
Coordinates
chr8:19264510-19265889:-
Coord C1 exon
chr8:19265674-19265889
Coord A exon
chr8:19265092-19265195
Coord C2 exon
chr8:19264510-19264594
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTGGATGACGTGTTTTCAGGAG
3' ss Score
4.88
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGTTATTTAAGAAGGTGGTTCCTCATCACTGTTTGGGCTCGATTTGGTCTCAGCGTGATAAAAAGGATGGCAAACAGAGTGCACCAACCATCCGTGCCACCATCACGCAGTTTAACGCGGTAACGGCGTGTGTGGTCAGCACTATCCTCCGTCAGCGGCAGATACGCCCGCATTTGCGTGCTCGCATCATACAGCGCTGGATCGACATCGCACAG
Seq A exon
GAGTGTCGCATTCGGAAGAACTTCTCGTCTCTAAGAGCCATCGTGTCTGCTCTGCAGTCCAACCCCCTCTACAGACTAAAGAGGACATGGGCATCTGTTGCTAA
Seq C2 exon
AGACAGCATGCAGATGTTTGAAGAGCTTTCTGACATTTTCTCCGACCAAAATAATTACCTTACAAGCCGGGAGCTGCTAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005989-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
PF0061714=RasGEF=FE(15.3=100)
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGATTTGGTCTCAGCGTGA
R:
GCTCCCGGCTTGTAAGGTAAT
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]