HsaEX6035420 @ hg19
Exon Skipping
Gene
ENSG00000143344 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:30281]
Coordinates
chr1:183853857-183861295:+
Coord C1 exon
chr1:183853857-183854072
Coord A exon
chr1:183857608-183857711
Coord C2 exon
chr1:183861211-183861295
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTAATCACTCCCCATGCAGGAA
3' ss Score
9.15
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAACTCTTCAAGAAAGTAGTGCCTCACCACTGCCTGGGCTGCATTTGGTCTCGAAGGGATAAGAAGGAAAACAAACATTTGGCTCCTACGATCCGTGCCACCATCTCTCAGTTTAATACCCTCACCAAATGTGTTGTCAGCACCATCCTGGGGGGCAAAGAACTCAAAACTCAGCAGAGAGCCAAAATCATTGAGAAGTGGATCAACATCGCTCAT
Seq A exon
GAATGTAGACTCCTGAAGAATTTTTCCTCCTTGAGGGCCATCGTTTCGGCACTGCAGTCTAATTCCATCTATCGGTTAAAAAAGACTTGGGCTGCCGTCCCAAG
Seq C2 exon
GGACCGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCAGACCATAATAACCATTTGACCAGCCGAGAACTACTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143344-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
PF0061714=RasGEF=FE(15.3=100)
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATTTGGTCTCGAAGGGA
R:
GTTCTCGGCTGGTCAAATGGT
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)