RnoEX6016148 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7122237-7123175:+
Coord C1 exon
chr3:7122237-7122452
Coord A exon
chr3:7122625-7122728
Coord C2 exon
chr3:7123091-7123175
Length
104 bp
Sequences
Splice sites
3' ss Seq
CACAGACTCCTTGTCCCCAGGAG
3' ss Score
6.82
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCTATTCAAGAAAGTTGTGCCCTACCACTGCCTGGGCTCCATCTGGTCCCAGCGGGACAAGAAGGGCAAGGAGCACCTCGCGCCCACCATCCGTGCCACTGTCGCCCAGTTCAACAACGTGGCCAACTGTGTCATCACCACCTGCCTTGGGGACCAGAGTATGAAAGCTTCGGACAGGGCCCGGGTGGTGGAACACTGGATCGAGGTGGCCAGG
Seq A exon
GAGTGCAGGGTGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACATGGGAAGAGGTCTCCAG
Seq C2 exon
GGGCAGCTTTCGAGTGTTCCAGAAACTGTCAGAAATCTTCTCTGATGAGAACAACTACTCCTTGAGCAGAGAGCTGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'14-20,'14-16,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(33.0=100)
A:
PF0061714=RasGEF=FE(15.8=100)
C2:
PF0061714=RasGEF=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAGTTGTGCCCTACCAC
R:
TCTGACAGTTTCTGGAACACTCG
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]