GgaEX1000682 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6793197-6794032:-
Coord C1 exon
chr17:6793817-6794032
Coord A exon
chr17:6793593-6793696
Coord C2 exon
chr17:6793197-6793281
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTATCTGCCCCCCAGGAG
3' ss Score
10.33
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAGCTGTTTAAGAAAGTGGTGCCTTACCACTGCCTGGGCTGCATCTGGTCCCAGCGAGACAAGAAGGGCAAAGAACACCTGGCACCCACCATCCGTGCCACGGTCTCGCAGTTCAATAGCGTGGCCAACTGTGTCATCGCCACGTGCCTCGGGGATCGGACCCTGAAGCCACAGCAGAGGGCTAAAGTGGTGGAGCGGTGGATCGAAGTGGCTCGG
Seq A exon
GAGTGCCGCATCCTGAAGAACTTCTCCTCGCTCAGAGCCATCCTTTCAGCTCTGCAGTGCAATGCTGTGCACCGGCTGAAGAAGACCTGGGATGAGGTCCTGCG
Seq C2 exon
GGAGAGCTTCCGCACTTTCCATGAGCTCTCAGAGATCTTCTCCGATGAGAACAACCACTCCTTGAGCCGGGAGCTGCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'17-15,'17-13,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGACAAGAAGGGCAAAG
R:
CTTAATGAGCAGCTCCCGGC
Band lengths:
249-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]