DreEX0007793 @ danRer10
Exon Skipping
Gene
ENSDARG00000076104 | SEMA4B (2 of 2)
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr7:29984034-29988034:+
Coord C1 exon
chr7:29984034-29984179
Coord A exon
chr7:29985644-29985819
Coord C2 exon
chr7:29987884-29988034
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGTGTGACCTCAGGAG
3' ss Score
7.35
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACCCAGCGTTTGTAGGTTCTGCTCACATTACTGGTTCGGACAGCGAGAGGAATGATGATCAGATCTACTTTTTCTTCAGTGAGACGGGGAAGGAGTTTGACTTCTTTGATAACACCATAGTGTCCAGGATTGCACGTGTGTGTAAG
Seq A exon
GAGGATCAAGGTGGAGAGAGAGTCCTGCAAAAGAAATGGACCACATTTCTGAAAGCTCAACTTTTGTGTTCGCTACCAGATGATGGCTTTCCTTTCAACATCATACAGGATGTATATGTACTTCCAGCCAAACGCAAGAAAAACACACTCCTTTATGCAGTCTTTGCTTCTCAATG
Seq C2 exon
GAGTAAAGGTCTTGCTGGCAGTTCCGCAGTGTGTGTGTTCAGCATGGATCAGGTGGATCGAGCCTTTACTGGCCGTTACAAAGAGGTGAATCGAGAGACACAACAATGGTACACATACACTCAATCTGTACCTGAACCACGACCAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076104-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.1=100)
A:
PF0140314=Sema=FE(13.4=100)
C2:
PF0140314=Sema=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACAGCGAGAGGAATGAT
R:
TGGTCGTGGTTCAGGTACAGA
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]