GgaEX1051640 @ galGal4
Exon Skipping
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19532524-19533552:+
Coord C1 exon
chr10:19532524-19532681
Coord A exon
chr10:19533107-19533288
Coord C2 exon
chr10:19533402-19533552
Length
182 bp
Sequences
Splice sites
3' ss Seq
GACCCCCAGTGCCCATACAGGGG
3' ss Score
2.36
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ACCCGGTGTTCGTGGGCTCAGCCTTCCTGCAGGAGAGCCTGCCTGCCGGCAACCCCGATGGCGATGATGACAAGGTCTACTTTTTCTTCAGCGAGACCGGCAAGGAGTTTGACTACTTTGAGAACACCATTGTGTCACGCATCGCACGCGTGTGCAAG
Seq A exon
GGGGACCAGGGTGGGGAGCGGGTGCTGCAGCGGCGGTGGACGACGTTCCTGAAGGCGCAGCTGCTCTGCTCGCACCCCGAGGACGGCTTCCCCTTCAACGTGCTGCAGGACGTCTTTGTGCTCACGCCCGGGGAGCAGCGCTGGAGGGAGACGCTCTTCTATGGGGTCTTCACGTCGCAGTG
Seq C2 exon
GAACAAGGGTGGCCTGGGCAGCTCGGCGGTGTGCGCCTTCCCCATGCACAGCGTGCAGAAGGCCTTTGGTGGGCTCTACAAGGAGGTGAACCGTGAGACCCAGCAGTGGTACACAGACACCAGCCCGGTACCAGAACCACGGCCAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'20-16,'20-13,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.8=100)
A:
PF0140314=Sema=FE(13.6=100)
C2:
PF0140314=Sema=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCTTCCTGCAGGAGAG
R:
TGTACCACTGCTGGGTCTCAC
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]