DreEX0007795 @ danRer10
Exon Skipping
Gene
ENSDARG00000067801 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr21:2753527-2757272:-
Coord C1 exon
chr21:2757103-2757272
Coord A exon
chr21:2756874-2756920
Coord C2 exon
chr21:2753527-2755331
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGTTATGTTTGTTTTTGCAGTAA
3' ss Score
8.52
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTCAGTTTCTGTATGCGGGTTCAGACTCAGGAGTGGTTCAGTCACCCACAGCGTTCTGTCAGAAATACGGCTCCTGTGTGGACTGTGTTCTGGCCCGGGACCCATACTGCGCCTGGGACACTCAATCCAAAGCCTGTGTGAACATCTTCCAGAGCAAAGCTGATCCACG
Seq A exon
TAAGATGATTCAGAACCTCAAAGGGGATGCTGGGATATGTCCTCCAG
Seq C2 exon
TGTCTCCTCTGGCAGTGAAGGATTATCCGCTGCTGTTGGTGAAGCCGGGTGCTTCAGCTGACCTGCCGTGTCGAGTTCAGTCAAACCGAGCTCAGGTCTTGTGGAAACTCAACAATCAGCTTCTCAGCGACTCCTCTTCACGCCTCCTCCTGATGTCCGAGAGCAGTTTACTGCTGTACAGCGTGACTATGGAGGACGCGGGACGCTACGAATGCTGGTCCGTCGAGTCCGCCGCGGGACAAAACTTCAGCCGTGTGGTGTCCGGATACATTCTGCGCTTAGACCTTCCCGAGAGCAAATCTGCACAGCTGACCCGCGAGCCCACTACGACCTCAGAAGGTAATAGTGTTAATAATAATAACAGCCCGGTGACGCCTGGACTAACGTCAGCGCCTACAGATGCCCCGTCACTAACAACTCCACCAACCTCTGCTATTAAACCCAAATCCAACATCCCTCCAGAGGTCAGTAACTCGCCCGCACGCACTGAAACGATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067801-'12-15,'12-13,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.296
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.7=66.7)
A:
PF0143720=PSI=PD(26.4=82.4)
C2:
PF138951=Ig_2=WD(100=27.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTGTGGACTGTGTTC
R:
ACCAACAGCAGCGGATAATCC
Band lengths:
140-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]