DreEX0008911 @ danRer10
Exon Skipping
Gene
ENSDARG00000036545 | TMPRSS3 (1 of 2)
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:46262076-46265051:+
Coord C1 exon
chr1:46262076-46262122
Coord A exon
chr1:46263395-46263560
Coord C2 exon
chr1:46264882-46265051
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCGTTGTTGTGTAGCGT
3' ss Score
6.47
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AAACACCCACTGCAATTCTGGCTTAGTGACTGCTGTCAAATGTATAG
Seq A exon
CGTGTGGCTACAGGTCGGCAATAAGCAGTCGTATTGTAGGAGGGAATGTGTCGAAGTCTGGCCAGGTCCCATGGCAAGTCAGCCTTCATTACCAGAACCAGTATCTCTGTGGAGGATCCATCATCAGTGAGAGCTGGATACTCACTGCTGCACACTGTGTGTTCGG
Seq C2 exon
ATTCGCGCAGCCAGTATTATGGGATGTGTATGCTGGGTTGATAAACCTGCCGCTGAGTAAAGCTGAAGCTCATTCTGTGGAGAAAATCATCTACCATGCCAACTTCAGGTCAAAAAGCTTCAGCTACGACATAGCGCTGATAAAGCTTGCACTACCTCTGACTCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036545_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.7=100)
A:
PF154941=SRCR_2=PD(4.9=8.9),PF0008921=Trypsin=PU(20.0=78.6)
C2:
PF0008921=Trypsin=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCCACTGCAATTCTGGC
R:
AGAGTCAGAGGTAGTGCAAGCT
Band lengths:
211-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]